Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance.
Identifieur interne : 000616 ( Main/Exploration ); précédent : 000615; suivant : 000617Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance.
Auteurs : Gabriele Di Gaspero [Italie] ; Dario Copetti ; Courtney Coleman ; Simone Diego Castellarin ; Rudolf Eibach ; Pál Kozma ; Thierry Lacombe ; Gregory Gambetta ; Andrey Zvyagin ; Petar Cindri ; Lászl Kovács ; Michele Morgante ; Raffaele TestolinSource :
- TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik [ 1432-2242 ] ; 2012.
Descripteurs français
- KwdFr :
- Gènes de plante (génétique), Génotype (MeSH), Haplotypes (génétique), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Oomycetes (MeSH), Pedigree (MeSH), Répétitions microsatellites (génétique), Résistance à la maladie (génétique), Sélection (méthodes), Sélection génétique (MeSH), Vitis (génétique).
- MESH :
- génétique : Gènes de plante, Haplotypes, Maladies des plantes, Répétitions microsatellites, Résistance à la maladie, Vitis.
- microbiologie : Maladies des plantes.
- méthodes : Sélection.
- Génotype, Oomycetes, Pedigree, Sélection génétique.
English descriptors
- KwdEn :
- MESH :
- genetics : Disease Resistance, Genes, Plant, Haplotypes, Microsatellite Repeats, Plant Diseases, Vitis.
- methods : Breeding.
- microbiology : Plant Diseases.
- Genotype, Oomycetes, Pedigree, Selection, Genetic.
Abstract
The Rpv3 locus is a major determinant of downy mildew resistance in grapevine (Vitis spp.). A selective sweep at this locus was revealed by the DNA genotyping of 580 grapevines, which include a highly diverse set of 265 European varieties that predated the spread of North American mildews, 82 accessions of wild species, and 233 registered breeding lines with North American ancestry produced in the past 150 years. Artificial hybridisation and subsequent phenotypic selection favoured a few Rpv3 haplotypes that were introgressed from wild vines and retained in released varieties. Seven conserved haplotypes in five descent groups of resistant varieties were traced back to their founders: (1) 'Munson', a cross between two of Hermann Jaeger's selections of V. rupestris and V. lincecumii made in the early 1880s in Missouri, (2) V. rupestris 'Ganzin', first utilised for breeding in 1879 by Victor Ganzin in France, (3) 'Noah', selected in 1869 from intermingled accessions of V. riparia and V. labrusca by Otto Wasserzieher in Illinois, (4) 'Bayard', a V. rupestris × V. labrusca offspring generated in 1882 by George Couderc in France, and (5) a wild form closely related to V. rupestris accessions in the Midwestern United States and introgressed into 'Seibel 4614' in the 1880s by Albert Seibel in France. Persistence of these Rpv3 haplotypes across many of the varieties generated by human intervention indicates that a handful of vines with prominent resistance have laid the foundation for modern grape breeding. A rampant hot spot of NB-LRR genes at the Rpv3 locus has provided a distinctive advantage for the adaptation of native North American grapevines to withstand downy mildew. The coexistence of multiple resistance alleles or paralogues in the same chromosomal region but in different haplotypes counteracts efforts to pyramidise them in a diploid individual via conventional breeding.
DOI: 10.1007/s00122-011-1703-8
PubMed: 21947344
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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Copetti</name></author><author><name sortKey="Coleman, Courtney" sort="Coleman, Courtney" uniqKey="Coleman C" first="Courtney" last="Coleman">Courtney Coleman</name></author><author><name sortKey="Castellarin, Simone Diego" sort="Castellarin, Simone Diego" uniqKey="Castellarin S" first="Simone Diego" last="Castellarin">Simone Diego Castellarin</name></author><author><name sortKey="Eibach, Rudolf" sort="Eibach, Rudolf" uniqKey="Eibach R" first="Rudolf" last="Eibach">Rudolf Eibach</name></author><author><name sortKey="Kozma, Pal" sort="Kozma, Pal" uniqKey="Kozma P" first="Pál" last="Kozma">Pál Kozma</name></author><author><name sortKey="Lacombe, Thierry" sort="Lacombe, Thierry" uniqKey="Lacombe T" first="Thierry" last="Lacombe">Thierry Lacombe</name></author><author><name sortKey="Gambetta, Gregory" sort="Gambetta, Gregory" uniqKey="Gambetta G" first="Gregory" last="Gambetta">Gregory Gambetta</name></author><author><name sortKey="Zvyagin, Andrey" sort="Zvyagin, Andrey" uniqKey="Zvyagin A" first="Andrey" last="Zvyagin">Andrey Zvyagin</name></author><author><name sortKey="Cindri, Petar" sort="Cindri, Petar" uniqKey="Cindri P" first="Petar" last="Cindri">Petar Cindri</name></author><author><name sortKey="Kovacs, Laszl" sort="Kovacs, Laszl" uniqKey="Kovacs L" first="Lászl" last="Kovács">Lászl Kovács</name></author><author><name sortKey="Morgante, Michele" sort="Morgante, Michele" uniqKey="Morgante M" first="Michele" last="Morgante">Michele Morgante</name></author><author><name sortKey="Testolin, Raffaele" sort="Testolin, Raffaele" uniqKey="Testolin R" first="Raffaele" last="Testolin">Raffaele Testolin</name></author></analytic><series><title level="j">TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</title><idno type="eISSN">1432-2242</idno><imprint><date when="2012" type="published">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Breeding (methods)</term><term>Disease Resistance (genetics)</term><term>Genes, Plant (genetics)</term><term>Genotype (MeSH)</term><term>Haplotypes (genetics)</term><term>Microsatellite Repeats (genetics)</term><term>Oomycetes (MeSH)</term><term>Pedigree (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Selection, Genetic (MeSH)</term><term>Vitis (genetics)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Gènes de plante (génétique)</term><term>Génotype (MeSH)</term><term>Haplotypes (génétique)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Oomycetes (MeSH)</term><term>Pedigree (MeSH)</term><term>Répétitions microsatellites (génétique)</term><term>Résistance à la maladie (génétique)</term><term>Sélection (méthodes)</term><term>Sélection génétique (MeSH)</term><term>Vitis (génétique)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Genes, Plant</term><term>Haplotypes</term><term>Microsatellite Repeats</term><term>Plant Diseases</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Gènes de plante</term><term>Haplotypes</term><term>Maladies des plantes</term><term>Répétitions microsatellites</term><term>Résistance à la maladie</term><term>Vitis</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Breeding</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term></keywords><keywords scheme="MESH" qualifier="méthodes" xml:lang="fr"><term>Sélection</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Genotype</term><term>Oomycetes</term><term>Pedigree</term><term>Selection, Genetic</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Génotype</term><term>Oomycetes</term><term>Pedigree</term><term>Sélection génétique</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Rpv3 locus is a major determinant of downy mildew resistance in grapevine (Vitis spp.). A selective sweep at this locus was revealed by the DNA genotyping of 580 grapevines, which include a highly diverse set of 265 European varieties that predated the spread of North American mildews, 82 accessions of wild species, and 233 registered breeding lines with North American ancestry produced in the past 150 years. Artificial hybridisation and subsequent phenotypic selection favoured a few Rpv3 haplotypes that were introgressed from wild vines and retained in released varieties. Seven conserved haplotypes in five descent groups of resistant varieties were traced back to their founders: (1) 'Munson', a cross between two of Hermann Jaeger's selections of V. rupestris and V. lincecumii made in the early 1880s in Missouri, (2) V. rupestris 'Ganzin', first utilised for breeding in 1879 by Victor Ganzin in France, (3) 'Noah', selected in 1869 from intermingled accessions of V. riparia and V. labrusca by Otto Wasserzieher in Illinois, (4) 'Bayard', a V. rupestris × V. labrusca offspring generated in 1882 by George Couderc in France, and (5) a wild form closely related to V. rupestris accessions in the Midwestern United States and introgressed into 'Seibel 4614' in the 1880s by Albert Seibel in France. Persistence of these Rpv3 haplotypes across many of the varieties generated by human intervention indicates that a handful of vines with prominent resistance have laid the foundation for modern grape breeding. A rampant hot spot of NB-LRR genes at the Rpv3 locus has provided a distinctive advantage for the adaptation of native North American grapevines to withstand downy mildew. The coexistence of multiple resistance alleles or paralogues in the same chromosomal region but in different haplotypes counteracts efforts to pyramidise them in a diploid individual via conventional breeding.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21947344</PMID><DateCompleted><Year>2012</Year><Month>05</Month><Day>01</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1432-2242</ISSN><JournalIssue CitedMedium="Internet"><Volume>124</Volume><Issue>2</Issue><PubDate><Year>2012</Year><Month>Feb</Month></PubDate></JournalIssue><Title>TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik</Title><ISOAbbreviation>Theor Appl Genet</ISOAbbreviation></Journal><ArticleTitle>Selective sweep at the Rpv3 locus during grapevine breeding for downy mildew resistance.</ArticleTitle><Pagination><MedlinePgn>277-86</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s00122-011-1703-8</ELocationID><Abstract><AbstractText>The Rpv3 locus is a major determinant of downy mildew resistance in grapevine (Vitis spp.). A selective sweep at this locus was revealed by the DNA genotyping of 580 grapevines, which include a highly diverse set of 265 European varieties that predated the spread of North American mildews, 82 accessions of wild species, and 233 registered breeding lines with North American ancestry produced in the past 150 years. Artificial hybridisation and subsequent phenotypic selection favoured a few Rpv3 haplotypes that were introgressed from wild vines and retained in released varieties. Seven conserved haplotypes in five descent groups of resistant varieties were traced back to their founders: (1) 'Munson', a cross between two of Hermann Jaeger's selections of V. rupestris and V. lincecumii made in the early 1880s in Missouri, (2) V. rupestris 'Ganzin', first utilised for breeding in 1879 by Victor Ganzin in France, (3) 'Noah', selected in 1869 from intermingled accessions of V. riparia and V. labrusca by Otto Wasserzieher in Illinois, (4) 'Bayard', a V. rupestris × V. labrusca offspring generated in 1882 by George Couderc in France, and (5) a wild form closely related to V. rupestris accessions in the Midwestern United States and introgressed into 'Seibel 4614' in the 1880s by Albert Seibel in France. Persistence of these Rpv3 haplotypes across many of the varieties generated by human intervention indicates that a handful of vines with prominent resistance have laid the foundation for modern grape breeding. A rampant hot spot of NB-LRR genes at the Rpv3 locus has provided a distinctive advantage for the adaptation of native North American grapevines to withstand downy mildew. The coexistence of multiple resistance alleles or paralogues in the same chromosomal region but in different haplotypes counteracts efforts to pyramidise them in a diploid individual via conventional breeding.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Di Gaspero</LastName><ForeName>Gabriele</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Dipartimento di Scienze Agrarie e Ambientali, University of Udine, via delle scienze 208, 33100, Udine, Italy. gabriele.digaspero@uniud.it</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Copetti</LastName><ForeName>Dario</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Coleman</LastName><ForeName>Courtney</ForeName><Initials>C</Initials></Author><Author ValidYN="Y"><LastName>Castellarin</LastName><ForeName>Simone Diego</ForeName><Initials>SD</Initials></Author><Author ValidYN="Y"><LastName>Eibach</LastName><ForeName>Rudolf</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Kozma</LastName><ForeName>Pál</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Lacombe</LastName><ForeName>Thierry</ForeName><Initials>T</Initials></Author><Author ValidYN="Y"><LastName>Gambetta</LastName><ForeName>Gregory</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Zvyagin</LastName><ForeName>Andrey</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Cindrić</LastName><ForeName>Petar</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Kovács</LastName><ForeName>László</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Morgante</LastName><ForeName>Michele</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Testolin</LastName><ForeName>Raffaele</ForeName><Initials>R</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>09</Month><Day>27</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Theor Appl Genet</MedlineTA><NlmUniqueID>0145600</NlmUniqueID><ISSNLinking>0040-5752</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001947" MajorTopicYN="N">Breeding</DescriptorName><QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D060467" MajorTopicYN="N">Disease Resistance</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005838" MajorTopicYN="N">Genotype</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006239" MajorTopicYN="N">Haplotypes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D009868" MajorTopicYN="Y">Oomycetes</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010375" MajorTopicYN="N">Pedigree</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012641" MajorTopicYN="Y">Selection, Genetic</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D027843" MajorTopicYN="N">Vitis</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2011</Year><Month>03</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2011</Year><Month>09</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>9</Month><Day>28</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>9</Month><Day>29</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2012</Year><Month>5</Month><Day>2</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21947344</ArticleId><ArticleId IdType="doi">10.1007/s00122-011-1703-8</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Plant J. 2011 Feb;65(4):610-21</Citation><ArticleIdList><ArticleId IdType="pubmed">21208308</ArticleId></ArticleIdList></Reference><Reference><Citation>BMC Plant Biol. 2008 Jun 13;8:66</Citation><ArticleIdList><ArticleId IdType="pubmed">18554400</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Plant Pathol. 2009 Jul;10(4):449-57</Citation><ArticleIdList><ArticleId IdType="pubmed">19523099</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome. 2003 Dec;46(6):1037-48</Citation><ArticleIdList><ArticleId IdType="pubmed">14663522</ArticleId></ArticleIdList></Reference><Reference><Citation>Theor Appl Genet. 2011 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last="Eibach">Rudolf Eibach</name><name sortKey="Gambetta, Gregory" sort="Gambetta, Gregory" uniqKey="Gambetta G" first="Gregory" last="Gambetta">Gregory Gambetta</name><name sortKey="Kovacs, Laszl" sort="Kovacs, Laszl" uniqKey="Kovacs L" first="Lászl" last="Kovács">Lászl Kovács</name><name sortKey="Kozma, Pal" sort="Kozma, Pal" uniqKey="Kozma P" first="Pál" last="Kozma">Pál Kozma</name><name sortKey="Lacombe, Thierry" sort="Lacombe, Thierry" uniqKey="Lacombe T" first="Thierry" last="Lacombe">Thierry Lacombe</name><name sortKey="Morgante, Michele" sort="Morgante, Michele" uniqKey="Morgante M" first="Michele" last="Morgante">Michele Morgante</name><name sortKey="Testolin, Raffaele" sort="Testolin, Raffaele" uniqKey="Testolin R" first="Raffaele" last="Testolin">Raffaele Testolin</name><name sortKey="Zvyagin, Andrey" sort="Zvyagin, Andrey" uniqKey="Zvyagin A" first="Andrey" last="Zvyagin">Andrey Zvyagin</name></noCountry><country name="Italie"><noRegion><name sortKey="Di Gaspero, Gabriele" sort="Di Gaspero, Gabriele" uniqKey="Di Gaspero G" first="Gabriele" last="Di Gaspero">Gabriele Di Gaspero</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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